Shameless plug: I am the author.
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To give one example, what if someone wants to have more than one set of options for the same app? That’s something I’ve needed before, and it’s really hard to accomplish if the app always looks in one specific place for its options.
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Not if you want to use both at the same time. Due example, I’ve wanted to have a local Gnome session that I leave signed in, and another session with different settings that I remote into.